E.coli RNA-seq Gene Expression Collection

I´m searching for a gene expression matrix over different conditions based on RNA-seq data. Is there a already a collected matrix of several experiments?

rna-seq e.coli

• 3,301 views • link

updated 9.5 years ago by Biostar

• written 9.5 years ago by Benni •

I've found the following papers. They may be useful.

https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0881-8

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965013/

https://www.google.ru/#newwindow=1&q=gene+expression+AND+matrix+over+different+conditions+AND+RNA-seq+data+AND+E.coli+AND+Is+there+a+already+a+collected+matrix+of+several+experiments%3F -

search for E.coli, it's a tutorial

• 0 views • link

written 9.5 years ago by natasha.sernova

0 answers

No answers yet.

More posts like this

cancer type prediction based on RNASeq gene expression data?
written 2.2 years ago by J.F.Jiang

Hi, I have several RNASeq data from FFPE, which were collected from several patients with cancer of unknown primary. I processed the RNASeq data using …
Statistic test for percentiles values
written 5.6 years ago by qstefano •

Hello there, I am looking for a statistical test to be able to make inferences on percentile values retrieved from gene expression in RNA-seq. I …
Normalization of RNA seq expression values between different experiments
written 5.7 years ago by qstefano •

Hello there, I have different E.Coli RNA-seq experiments data, i need to compare them to find which genes are not differentially expressed. In each experiment …
Possible to directly compare RNA-Seq and DGE data?
written 8.7 years ago by ez935 •

Hello, I have sequencing data from RNA-Seq and DGE (Digital Gene Expression) for the following conditions: RNA-Seq: Condition A + Condition B DGE: Condition B …
Choosing the right RNA-seq experiment: polyA mRNA vs polyA depleted
written 9.3 years ago by fabrizio.frasca •

Hello (: I am relatively new to bioinformatics and I am a Computer Scientist, not a biologist so, I apologize in advance if the question …
Data on translational efficiency of genes in e.coli?
written 9.3 years ago by Benni •

I´m searching for existing data on translational efficiency of genes in e.coli. The efficiency is influenced by the codon bias, the Shine-Dalgarno sequence etc.. Maybe …
Correlation Metric for Gen Expression Matrix that is robust against noise?
written 9.7 years ago by Benni •

Currently I´m using Pearson, but is there a more robust distance metric? I want to calculate the correlation between two genes over several conditions.
Using Random Forest as a supervised cluster algorithm?
written 9.7 years ago by Benni •

I want to cluster genes based on a expression matrix and annotation. With unsupervised learning algorithms (Hierachical, K-means,...), the clusters are only based on the …
E.coli: Does the protein mass per cell change over different conditiones?
written 9.9 years ago by Benni •

For the data analysis of my Proteom experiment, I´m searching for evidence/papers that investigate the change of the total Protein mass in E.coli over different …
Is It Valid To Convert A Fold Change Matrix Into Z Score?
written 12.7 years ago by k.nirmalraman

<p>Dear All,</p> <p>As an assay output we measure expression of one gene per well in a 96 well cell culture plate at different time points/conditions. …