With base R, it's just a matter of subsetting the data frame.
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Jean-Karim Heriche
problem in extracting sequences
I have a file which contains n number of transcript id of up-regulated genes in csv format. and i need to extract the sequences of only those id's which are up-regulated. how can i extract those sequences?
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Devon Ryan
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smrithysimon •
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smrithysimon •
1 answer
Write a few lines of code in R with GenomicFeatures, in particular the extractTranscriptSeqs() function.
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Devon Ryan
I'm assuming that the person doesn't have a data frame that includes the sequences...
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Devon Ryan
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