transcript id for gene id in ballgown
Hi everyone
I am will do some visualization in R And I done differential expression analysis and get some csv but this csv table contain transcript id without gene id. for visualization I have to know which transcript for which gene so I can get transcript id for gene id.
There is ballgown::transcriptNames(bg)[*] *transcriptid
but I don't know already transcript id for DPM1 genes (ENS00000000149)
Thank you for any kind of help.
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Your question is unclear. Are you saying that you have the transcript ids but don't know which gene ids are associated with these transcript ids? If so, and if your transcript ids and gene ids from Ensembl then Biomart will be a good option for getting a table of transcript ids and their corresponding gene ids.