3D PCA Plot from RNA-Seq data

Question

[####]

I want to make 3d PCA plot with 2 components from RNA-Seq data.

3D Plot Refer following link for reference: https://postimg.org/image/gvvkpj0xl/

I want to make exactly same plot using RNA-Seq data.

[Alex Reynolds]

Cubemaker might be a quick way to deal with this. It was originally developed for PCA components, but can plot any 3D numerical dataset.

[####]

I have seen your tool Cubemaker , it really interesting. But, I have few questions specific to cubemaker, where shall I post those ..looking for a forum or a mail id for direct questions.

[Alex Reynolds]

You could post your questions in that thread, if that works.

Answer 1

[Jean-Karim Heriche]

For 3D plots in R, have a look at scatter3d() in the car package, the scatterplot3d package, the plot3D package or the rgl package. You'll find introductions to these packages here.

Answer 2

[Joe]

I really like plotly which has APIs in R and Python for making interactive 3d plots