filter genes by DE in correlation
hello, I have many pairs of coding and lncoding molecules that correlate according to their expression,how can I consider the pairs of coding-non coding, which are both deferentially expressed?
• 200 views
•
link
updated
by
Lars Juhl Jensen
•
written
by
Edalat •
•
written
by
Edalat •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Single probe id for multiple genes in Microarray
written by Mohita •
-
Question in RNA-Seq gene expression profiling
written by Cy •
-
how can I get long non coding RNA from RNA-seq data
written by hodatn •
-
Lnc RNA,RNA Seq
written by sa1987 •
-
co-expression network with meta-analysis result
written by Edalat •
-
co-expression network with meta-analysis result
written by Edalat •
-
Input data for co-expression network by cytoscape
written by Edalat •
-
number of genes for co-expression network
written by Edalat •
-
fisher exact test
written by Edalat •
-
microRNA traget identification
written by rob.costa1234
You need to add more information to this question, this barely makes sense to me.
I have some coding-noncoding RNAseq data,I did differential expression and then calculated correlation between them.there are many pairs of coding and noncoding molecules that correlate according to their expression,I filter them (> 0.9 and < -0.9). Additionally, I've considered the pairs that have p-values < 0.001,but they are many pairs yet.now I want to filter them and consider the pairs of coding-non coding, which are both differential expressed.what should I do?
You run the correlation again by taking only coding and non-coding mRNA.