after completing the de-novo assembly i got my transcriptome. is there any tool where i can upload that and find the gene expression?
after completing the de-novo assembly i got my transcriptome. is there any tool where i can upload that and find the gene expression? how i can get the pathway of new transcriptome using kegg?
• 1,411 views
•
link
updated
by
lakhujanivijay
•
written
by
smrithysimon •
•
written
by
smrithysimon •
1 answer
The ideal workflow would be :
From your assembled transcripts -> Run CD-HIT -> Run Transdecoder to get the Coding Regions Within Transcript -> blastx the CDS (functional annotation) / use the KEGG server
• 0 views
•
link
written
by
lakhujanivijay
Log in to answer this question.
More posts like this
-
Non-specific annotations in KEGG, Pfam for plant denovo RNA seq data
written by Hemangi •
-
de novo transcriptome assembly of Oxford Nanopore Technologies long reads
written by Alicia •
-
KEGG enrichment for non-model organism
written by sbchua.1990 •
-
pathway analysis tool
written by smrithysimon •
-
KEGG Mapper error
written by mike.thon •
-
News: De Novo Transcriptome Analysis (Assembly and Differential Gene Expression in Non-Model Organi…
written by JohnBlue81
-
News: Upcoming Hands-On Workshop: De Novo Transcriptome Assembly and Analysis
written by David Langenberger
-
KEGG annotation results and transcriptome assembly quality
written by seta
-
Merge 2 de novo assembly generated using Trinity?
written by nbvasani
-
How To Get Entire Kegg Or Reactome Pathway Genes As One Interaction Network?
written by Diwan
