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KEGG Mapper error

I'm trying to decorate some kegg pathway maps with expression data using the KEGG Mapper from the kegg website.
In the first text field I enter the kegg pathway of interest (zma00940) and then I upload a text file with my test data (see below). I click 'exec' but I get an error: 0 does not exist. I guess there is some problem with the format of my data dont see what it could be. Any help would be appreciated.

zma:100381820   20
zma:100273579   5
zma:103627433   1
kegg

1 answer

Apparently the KEGG color mapper requires a header row:

#zma    count
zma:100381820   20
zma:100273579   5
zma:103627433   1

When I add that to the file, it seems to work.

Thanks, that fixed the error in my original question but the enzymes in the pathway map image don't seem to be color shaded. there must be some other problem with my input data. Well, I'll keep at it and post another question if I can't figure it out.

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