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What software can determine Tuberculosis genome lineage?

What software can determine Tuberculosis genome lineage? I tried Mykrobe Predictor only. Is there any other alternative?

genome lineage
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updated by natasha.sernova natasha.sernova • written by lukdubkvas • lukdubkvas

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written by Michael Dondrup Michael Dondrup

1 answer

See this site:

http://tbinsight.cs.rpi.edu/run_tb_lineage.html

See these articles:

TB-Lineage: an online tool for classification and analysis of strains of Mycobacterium tuberculosis complex.

https://www.ncbi.nlm.nih.gov/pubmed/22406225

PhyResSE: a Web Tool Delineating Mycobacterium tuberculosis Antibiotic Resistance and Lineage from Whole-Genome Sequencing Data

http://jcm.asm.org/content/53/6/1908.full

TGS-TB: Total Genotyping Solution for Mycobacterium tuberculosis Using Short-Read Whole-Genome Sequencing

http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0142951

Genomic epidemiology of Lineage 4 Mycobacterium tuberculosis subpopulations in New York city and New Jersey, 1999–2009

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5117616/

PolyTB: A genomic variation map for Mycobacterium tuberculosis

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4066953/

Construction of a virtual Mycobacterium tuberculosis consensus genome and its application to data from a next generation sequencer

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4425900/

Genomic characterization of Mycobacterium tuberculosis lineage 7 and a proposed name: ‘Aethiops vetus’

http://mgen.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000063

And there are much more, unfortunately...

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written by natasha.sernova natasha.sernova

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