This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Data repository for Whole Exome Sequencing

Hi,

I was wondering if there is any data repository like GEO for Whole Exome Sequencing data.

Thanks for your help.

Alejandro

UPDATE

If anyone has the same question, it was quite easy to upload the bam files to the SRA database.

Thanks for the suggestions!

wes database geo
• 5,370 views • link
written by Alejandro Jimenez Sanchez Alejandro Jimenez Sanchez

3 answers

NCBI SRA. Also accessible from EBI-ENA and DDBJ.

• 0 views • link
written by GenoMax GenoMax

I would add dbGaP to the list.

NCBI actually has a nice page explaining the different databases it hosts for public data: https://www.ncbi.nlm.nih.gov/home/submit-wizard.shtml

dbGaP archives descriptions, supporting documentation and results of human clinical and non-clinical studies investigating the interactions of human genotype and phenotype, including genome-wide association studies.

• 0 views • link
written by igor igor

There is also ExAC, hosted by the Broad Institute, http://exac.broadinstitute.org/

• 0 views • link
written by mastal511 mastal511

I was unable to find any sequence data there, just variant calls...

• 0 views • link
written by Brian Bushnell Brian Bushnell

ExAc is not a repository for hosting raw sequencing data.

• 0 views • link
written by poisonAlien poisonAlien

I stand corrected. Looks like ExAC is a repository for aggregating the results of human exome studies, but not the actual sequencing reads.

• 0 views • link
written by mastal511 mastal511

Log in to answer this question.

More posts like this