How to install Trimmomatic-0.36

I want to install Trimmomatic tool. I downloaded software from below link and after unzip.

I am trying to use make make install But these cammands are not working. Please suggest how I can install this tool?

http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.36.zip

Thanks

rna-seq

• 33,926 views • link

updated 9.6 years ago by WouterDeCoster

• written 9.6 years ago by Bioinfonext

1 answer

I assume you downloaded a .jar file, which you don't have to compile/install.

The cOmmands for running this tool are at http://www.usadellab.org/cms/?page=trimmomatic and at http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/TrimmomaticManual_V0.32.pdf

• 0 views • link

written 9.6 years ago by WouterDeCoster

More posts like this

Sailfish - No <install_dir>/bin folder after installation
written 4.2 years ago by GA •

Hello, I followed the steps listed below to install sailfish according to this instructions https://sailfish.readthedocs.io/en/master/building.html#installation. I know I need to add the <install_dir>/bin to my …
how to plot correlation data in R
written 4.8 years ago by Bioinfonext

Hi, I have got spearman's correlation and P value like below in two separate files. Could anyone please suggest how I can make an input …
Wheter adapter and other technical sequences can occur in any location within reads ?
written 6.9 years ago by demolidd77 •

HI, there is a sentence "Although adapter and other technical sequences can potentially occur in any location within reads" in the [trimmomatic manual][1] , as …
SRA tool kit 2.9.4
written 7.4 years ago by mohsinazeem30 •

Hy , I am looking to install NCBI SRA tool kit 2.9.4 current version in my linux ubuntu distribution. I have downloaded from from NCBI …
R package installtion error
written 8.0 years ago by amitunited0532 •

When i gonna install packages it showing error like this. trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.3/survival_2.42-3.zip' Content type 'application/zip' length 4396605 bytes (4.2 MB) downloaded 4.2 MB trying …
How to install pip on HPC server
written 8.5 years ago by Bioinfonext

I am working on HPC server where already different version of python installed. I need to use pip to install some bioinformatics software. But When …
Trimmomatic not displaying summary
written 8.7 years ago by kiddodoraemon •

Hello all, i am a beginner in this field. i'm grateful for your advice and help : i was running Trimmomatic0.36 on terminal using my …
trimmomatic excution error
written 8.9 years ago by sanariyaz21 •

hi i have installed trimmomatic 0.36 on ubuntu 14.04 the following is the command i use : trimmomatic PE -threads 4 -phred33 DRR001913_1.fastq DRR001913_2.fastq trimmed_DRR001913_1.fastq …
Confusion about Illumina PE reads structure
written 10.3 years ago by Picasa

Based on these figures: http://www.illumina.com/content/dam/illumina-marketing/images/products/truseq_custom_amplicon_workflow.jpg https://sites.google.com/a/brown.edu/bioinformatics-in-biomed/qiime-tutorial-3 I don't understand what is the final structure we got for a paired end fastq: 1) In the second …
Trimmomatic adapter fasta file preparation
written 10.6 years ago by zhengyunchaosky •

Hi,dear all, I have read http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/TrimmomaticManual_V0.32.pdf. However I am still not clear how to prepare my own adapter file. My data is genome reseq, PE …