fastq dump error: ERROR:106: Magic cookie '#%Module' missing
Trying to use fastq dump to separate pair end reads file from SRA files.
fastq-dump --split-3 xxx.sra
it worked for a few files but for some file, it throw the error:
locate_module.c(591):ERROR:106: Magic cookie '#%Module' missing in '/fastq-dump' ModuleCmd_Load.c(208):ERROR:105: Unable to locate a modulefile for '/sratoolkit/bin'
Anyone know what is going on?
Thanks
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Are you using the latest version of SRAtoolkit? That would be the first thing to check.
Yes, just download and installed it on my new machine..it works on most samples.