I'm trying to use vcf-merge to combine 2 exome capture vcf files (~250K and ~330K in size) before trying it on all 96 samples. I'd …

Hi, Trying to use VCF tool's vcf-compare function. I have bgzipped and tabixed indexed my files bgzip -c file.vcf > file.vcf.gz tabix -p vcf file.vcf.gz …

mmm what does this error mean?Is any way to fix it? vcf-isec -c 10.vcf.gz 4.vcf.gz 2.vcf.gz | bgzip -c > out.vcf.gz Warning: The column names …

1) shared SNPs in all three samples $ vcf-isec -n +3 4751_97PASS.vcf.gz 4751_42PASS.vcf.gz 4751PASS.vcf.gz | gzip -c > 4751shared.vcf.gz & 2)Error $ Leading or trailing …

Dear all, we do have a large number of VCF files , I am attempting to merge all of them by using VCF tools, in …

I am trying to add gene identifiers to a vcf file using vcftools 0.1.14. I first use the below command to unzip the vcf, sort, …

I am new to Linux and programming and am trying to use vcftools. I have 3 vcf files; each one is a different population (i.e. …

<p>I have installed the latest version of Vcftools. I can see there is VcfStats.pm installed in vcftools perl folder below. But when I run some …

<p>I have vcf 4.1 format. It was saying first the VCF appears to be invalid. According to VCF specification, the fields "Number=-1" should be "Number=." …

<p>[perl]$ ./vcf-merge 1.flt.vcf.gz 2.flt.vcf.gz 3.flt.vcf.gz 4.flt.vcf.gz 5.flt.vcf.gz 6.flt.vcf.gz 7.flt.vcf.gz 8.flt.vcf.gz 9.flt.vcf.gz 10.flt.vcf.gz 11.flt.vcf.gz | bgzip -c &gt; merged.vcf.gz </p> <p>-bash: bgzip: command not found The …