Detection of Chromosomal Aberrations in Exome Sequencing Data
Hi!
Hope someone can help me to find a good visual program for detect of chromosomal aberrations in exome sequencing data.
To see soemthing like this
Thanks! :)
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The plots are not clear,Can you explain what kind of plots are these? log2CNA plots ?
well Im not so sure just liked the visual graphic part
http://www.bloodjournal.org/content/126/23/3859?sso-checked=true
got from this article is an CNA analysis.
Dont need to be like that exactly, this other one looked also nicely even is comparing between microarray
Check out these packages in R https://www.bioconductor.org/packages/devel/bioc/vignettes/copynumber/inst/doc/copynumber.pdf https://github.com/griffithlab/GenVisR