SGA Assembler Indexing Error
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Entering edit mode
7.4 years ago

Trying to index fastq reads but getting error Already preprocess fastq file using sga preprocess READS > out.fastq command.

sga index datafastq/humanUpairedSGA.fastq

Building index for /home/rafay/datafastq/humanUpairedSGA.fastq in memory using SAIS
initializing SA
terminate called after throwing an instance of 'std::bad_alloc'
  what():  std::bad_alloc
Assembly ngs denovo • 1.5k views
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