Hi!

Has anybody used SvSeq2 (https://sourceforge.net/projects/svseq2/files/SVseq2_2/) for calling CNVs insertions in bam files?

I tried it for calling deletions and it worked fine but with insertions it said:

    working for insertions
###########################################################
handling sample_sorted.bam
Finding signiture.
terminate called after throwing an instance of 'std::bad_alloc'
  what():  std::bad_alloc
/var/spool/slurmd/job08214/slurm_script: línea 7: 3500661 Abortado                (`core' generado) ./SVseq2_2 -insertion -b sample_sorted.bam -c chr2 --o res
ult_insertion.txt --ci 3

It seems to be a problem with the RAM memory because of the error std::bad_alloc but I've checked it and that's not the case.