TPM and RPKM normalization from counts dataframe

Folks: I have two dataframes for counts information from two RNAseq data... is there a quick way to get from counts to TPM or RPKM or both efficiently?

Thanks

rna-seq

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updated 9.8 years ago by Ron 118 • | written 9.8 years ago by leohawk 0

2 answers

my post may help you http://crazyhottommy.blogspot.com/2016/07/comparing-salmon-kalliso-and-star-htseq.html

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written 9.8 years ago by Ming Tommy Tang 469

It has been answered before:

Convert HTSeq count table to RPKM value using GFF/GTF

http://bioviz.org/pollen/A_thaliana_Jun_2009/SupplementalDataFiles/SupplementalDataFiles1to3.html

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written 9.8 years ago by Ron 118

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