Enhancer regions for rn5
Seeking a reproducible database for rn5 enhancer regions or a protocol that I could use as a reference -- any leads?
Thanks in advance!
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bioinfc37 •
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If you have access to raw / or RPKM normalized bedGraph files for DNase, H3K4me1, H3K4me3, and H3K27Ac then you can use my tool CIPHER to predict potential enhancer elements. If you don't have access to these ChIP-seq/DNase-seq datasets and you can't find them for your preferred cell line in ENCODE / Roadmap Epigenetics then you're best bet is to look into a database like EnhancerAtlas.
Goodluck!
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