How can I extract sequence from the human reference that maps to end sequences from FOSMIDs?
I have 5 Fosmids in fasta format, and I want to take the end sequences (around 300 bases) and use those to find the whole sequence inside the reference. Would I BLAT them, find coordinates and enter that into UCSC browser? Or is there a better way?
• 1,249 views
•
link
written
by
SaltedPork
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Which locus should be considered the true ortholog after liftOver disagreement between chrUn and ch…
written by jhonatan.henrique •
-
UCSC genome browser negative strand positions
written by ijarne •
-
Mapping cDNA sequence of a single gene to a genome not hosted at UCSC server (without Blat)
written by rahu •
-
How to understand data in custom track of ucsc genome browsers
written by Kash
-
Get mRNA sequence from UCSC genome browser using coordinates
written by Amos •
-
Finding motifs across a genome
written by ioannis •
-
Find reads that completely cover short sequences
written by valerie
-
How can I assign sequence length to an ID in a FASTA file using Perl?
written by SaltedPork
-
BLAT and Get DNA queries automation
written by guywie •
-
Obtaining A Fasta With Conserved Region Near A Gene In Ucsc Genome Browser
written by Anima Mundi
