differentially expression analysis using raw read counts
2 answers
Have a look at DESeq2, edgeR, limma-voom and perhaps this workflow from Bioconductor http://www.bioconductor.org/help/workflows/rnaseqGene/
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WouterDeCoster
Here is tutorial using DESEQ2
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Hi Ashkan,
Please have a look here and here.
~ Best
this tutorial is very useful
C: DE analysis by edgeR