viewing microRNA in IGV

I have bam alignments of human microRNA geocode 19 What is the best way to view such bam files in IGV. I could not find sepcific microRNA based geneome in IGV repository. Any suggestion

Thanks

microrna igv

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written 9.8 years ago by rob.costa1234

The usual genome should work. I am assuming that the alignment (for the small RNA-seq reads) was done on hg19 genome.

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written 9.8 years ago by Amitm

hg19 will not have microRNA names/ annotations. the way I did was aligned with hg19 and discard coding seq and keep regions which show align only with miR19 db

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written 9.8 years ago by rob.costa1234

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