keeping trimmed edges

Question

[blur]

Hi,

I was wondering if there was a way, using cutadapt/trim_glore to somehow save the trimmed edges in a way that I can connect them to the original read? Or is it a write-your-own-script scenario? Thanks :)

Answer 1

[Devon Ryan]

That's a write your own script scenario.

[WouterDeCoster]

And if you need a suggestion on how to start: write a script to compare the original reads to the trimmed reads. Shouldn't be too hard :-D