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ID-Mapping: EntrezProtein to UniprotKB

Hello, what is the go-to way for mapping Entrez-Protein-ID to Uniprot? I usually use the Uniprot-Mappingservice but unfortunately it doesn't cover Entrez-Proteins.

Cheers

mapping uniprot entrez
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updated by EagleEye EagleEye • written by bi_Scholar • bi_Scholar

These are RefSeq/Genpept ID's or something else?

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written by GenoMax GenoMax

They are Entrez-Protein-IDs, at least thats what the column in my database states.

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written by bi_Scholar • bi_Scholar

Can you post a few examples? If the answer provided by @EagleEye is satisfactory then you are all set.

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written by GenoMax GenoMax

Here are some sample-entries: 

Entrez Protein  AAF22032
Entrez Protein  BAC85338
Entrez Protein  BAE48238
Entrez Protein  BAB71206
Entrez Protein  BAC85939

In the linked post from @EagleEye , BioMart is proposed to create a mapping-file, but I can't find an option to include Entrez IDs.

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written by bi_Scholar • bi_Scholar

These appear to be cDNA's (that may also be translated). From the examples you posted here I was able to convert 4 out of 5 using the UniProt ID converter tool and "EMBL/GenBank/DDBJ CDS" as the "From" option. See how many you can get that way.

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written by GenoMax GenoMax

Wow, thanks alot! I could map >90% of 40k IDs, which is more than enough for what I'm doing.

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written by bi_Scholar • bi_Scholar

1 answer

You will find information you needed in this link. I guess you are looking for mapping Entrez ids to Uniprot Ids.

C: Reliable Database containing info for Entrez ID's and Entrez Symbols

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written by EagleEye EagleEye

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