Problem with accessions retrieved from batch entrez
I had a protein GI list from arabidopsis. Using batch entrez I found their relative proteins and then downloaded these proteins accessions. Now I want to map this accessions to uniprotkb, but ID mapper can't find any result. my accessions retreived from batch entrez are like these:
AAA32783.1
CAB62020.1
D71437
NP_176135.1
AAL91293.1
A9QGV6.1
What is the difference between these accessions? Why uniprot can't map my accessions? What can I do?
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ehsansepahi •
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This appears to be a mishmash of ID's. If you select RefSeq_Protein then the NP_* maps. Using Embl/GenBank/DDBJ CCDS maps two more (CAB, AAL) etc.
You may as well stick the GI list directly in the Uniprot ID mapper and be done.