How we can find the maximum number of peaks (coverage) in a bigWig data file to analyze a chip-seq data? I do not know if …

Hi there!!! I have profile around 60 WGS metagenomic samples with `MetaPhlAn 3.0`. In the next step I have merged all the output profile files …

Hello, I downloaded some files from GSE42880, as you can see from the original GEO data, the data are in .bam.wig.gz format. I am quite …

Hello Biostars, I want to identify lincRNAs from RNA-Seq data. For this purpose, first I ran cufflinks which gave me GTF to enter into iSeeRNA …

hi, all, I am a green hand. I downloaded some wig files from GEOdatasets and installed "rtracklayer" package. however I don't know which function can …

<p>hi all</p> <p>I am working with somatic mutations in prostate, I downloaded the MAF files + clinical data from TCGA and I installed MuSiC to …

Hi I have a number of wiggle files some of the wiggle files have span size of 300, others have span size of 100,200 and …

<p>I have chr<em>.data phastcons scores for mm9 from UCSC genome browser. Btw i need corresponding binary wiggle files for them. chr</em>.data has already fixed step …

<p>Hi I have a wig file(variable step) I want to convert this wig file to a bed file. Can anyone tell me how to do …

<p>Hi,</p> <p>I have wiggle files for each chromosome generated from MACS peak calling. Instead create a custom track for each chromosome from these wiggle files, …