Thanks! I appreciate the help.
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MACS2 ATAC-Seq Help! Danio Rerio?
Hello all,
I'm currently fleshing out the middle part of an ATAC-seq pipeline for a Zebrafish study, and I'm running into a bit of a wall with my MACS2 parameters. I want to pass a value to -g (effective genome size), but I'm running into a problem finding any valid effective genome sizes for Dario Rerio. Does anyone out there have a better value than me just taking 70% of the total genome length?
Thanks for all the help,
- Kyle Shank
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