which genome fasta and GTF files I should use

hi,

I have link for downloading some fq files for candida albicans , but actually in ENsembl I fund many candida albicans strains then on which pairs of genome fasta-GTF I should perform DE analysis while there are many c.albicans there???

http://fungi.ensembl.org/info/website/ftp/index.html

thank you

rna-seq gtf

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written 9.9 years ago by zizigolu

1 answer

You should use the closest strain (if an exact match is not available). If not use the standard reference strain.

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written 9.9 years ago by GenoMax

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