More posts like this
-
Using Arriba on single cell data set (scRNA-seq)
written by sogand •Hi, I am also interested in using Arriba to find fusions for my single cell dataset since I could not find any reliable option for …
-
Polishing genome assembly
written by Lissa Cruz Saavedra •Hi everyone I am working on genome assembly. I already run an assembly using PacBio hifi reads and hifiasm software. However, I want to improve …
-
Call 5mc methylation in Pacbio revio platform
written by yh •Hey guys, i 'm now trying to call 5mc probability from Pacbio revio ccs.bam, but i failed. i find the hifi-kinetic signal in revio ccs.bam, …
-
Detect fusion genes from WES data
written by enes •Hi guys, I want to find fusion genes from WES data. I searched some tools but generally they take input as RNA-seq data. Is there …
-
Are there any gene fusion detector using the third-generation sequencing?
written by wuqingkuangsha •Are there any gene fusion detector using the third-generation sequencing? Besides IDP-fusion, it is not friendly to users. And will it work if I just …
-
How to find fusion gene using iso-seq?
written by wuqingkuangsha •I would like to find some fusion genes using iso-seq method. Is there any tutorial about the pipeline and software on how to find fusion …
-
What is the next step after download the ncbi sra data of pacbio RSII sequencing
written by Sparrow_kopHi, guys! I am a newbie in pabio sequence analysis , recently I download some pacbio RSII data from ncbi sra database, after fastq-dump , …
-
Steps to process CNV level 3 files from TCGA database
written by Na SedI am trying to process the CNV files downloaded from TCGA database. Actually, I am not familiar with this type of data and it is …
-
PacBio transcriptome and gene annotation
written by Alex<p>I have:</p> <p>1) well assembled PacBio only genome with related organism with well annotated genes</p> <p>2) Illumina transcriptome</p> <p>3) PacBio transcriptome</p> <p>4) Not so good …
-
Identify significantly mutated genes in mouse cancer genome
written by jeefpan •Hello, guys, I want to identify the significantly mutated genes from several pieces of mouse cancer genome sequencing data. Do you know some software which …