That is great! Thank you a lot!
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Hi all!
I would like to write a program in python which will connect to PubMed database and according to rs number or nucleotide change find all PubMed Ids. In addition I would like to have PubMed ID only for polish population - publications where polish population is mentioned.
Could you please give me some suggestion? Maybe there is a python library which could make everything easier?
Best,
Agata
Entrez package from BioPython will help you to achieve your goal and also here is a full documentation of BioPython
example to get article Id about Polish
from Bio import Entrez
def search(query):
Entrez.email = 'yourEmail@example.com'
handle = Entrez.esearch(db='pubmed',
sort='relevance',
retmax='20',
retmode='xml',
term=query)
results = Entrez.read(handle)
return results
my_id_list = search("poland")["IdList"]
Good luck.
That is great! Thank you a lot!
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