Hello everyone,
I'm trying to download and run SPAdes 3.9.0 on a Mac OS (10.10.5). I've downloaded the gunzipped file with the command: curl http://spades.bioinf.spbau.ru/release3.9.0/SPAdes-3.9.0-Darwin.tar.gz -o SPAdes-3.9.0-Darwin.tar.gz
then tar -xzf SPAdes-3.9.0.tar.gz
changed directory to SPAdes-3.9.0-Darwin
According to the manual, it is supposed to be good to go. I have tried testing it in the SPAdes directory using spades.py --test, but it says command not found.
I have no idea what I am doing wrong or why this is not working. It it executable when I look at ls -l.
Please help me!
Since the directory you are in is not in your $PATH you are not able to run the program the way you tried it. Instead try this (if you are in the spades directory):
./spades.py --test
It would be best if you at least familiarize yourself with the basics of unix command line using this tutorial. This will save you a lot of heartache down the road.
I did try to put the directory in the $PATH and run the program but it still did not work... Thank you for your answer and the tutorial.
Did you run the command the way I showed above (while you were in the SPAdes directory)? What did that produce (an error or some other message)?
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