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Mappability - Peak Seq (Convert chr1.fa to chr1b.out)

From this link http://archive.gersteinlab.org/proj/PeakSeq/Mappability_Map/Code/

I downloaded and tried to run as per the instruction in README file. But what is <merlen> as stated in the code?

How to compile this to get chr1.out file from chr1.fa?

peakseq mappability rna-seq chip-seq

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