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Solanum tuberosum reference, where can I download it?

Hi all,

I would like to perform RNA-seq analysis for potato. Unfortunately I cannot download genome, trancriptome or annotation files from Plant Genome Database (ftp side not working at all). Do you know where else I can download those reference files?

Many thanks for any suggestions,

Best,

Agata

plant rna-seq
• 2,862 views • link
written by agata88 agata88

5 answers

Have a look here: http://plants.ensembl.org/Solanum_tuberosum/Info/Index

• 1 views • link
written by WouterDeCoster WouterDeCoster

Ha, great minds think alike.

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written by Emily Emily

Indeed, and at the same time too :-)

• 2 views • link
written by WouterDeCoster WouterDeCoster

We have it in Ensembl Plants.

• 1 views • link
written by Emily Emily

Or via the download link on this page: http://bioinformatics.psb.ugent.be/orcae/overview/Soltu

• 1 views • link
written by lieven.sterck lieven.sterck

In case you are partial for NCBI. Their version is here.

@agata88: Is google not available in Poland :-)

• 1 views • link
written by GenoMax GenoMax

Funny :P It is available :)

• 1 views • link
written by agata88 agata88

Thank you a lot ! PS. Why searching for so long if I can have answers in few minutes ... lol :)

• 1 views • link
written by agata88 agata88

Now we do want to know which one you are going to use ;)

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written by WouterDeCoster WouterDeCoster

Since @agata88 is in Europe (and looking at the upvotes) it looks like Ensembl :-D

• 1 views • link
written by GenoMax GenoMax

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