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What is the most popular and best tools/pipeline for small RNA seq analysis?

Dear All

I have to analyze a small RNA-seq data. This is my first time working with small RNA. I search threads here but the most recent is 2013.There are several new tools/publictions since 2015 but they doesn't have much citations. I have no hint how to make choose. What is the most popular and best tools/pipeline for small RNA seq analysis?

Any help will be appreciated.

pipeline small rna seq
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updated by accfree • accfree • written by FAST_GENOME FAST_GENOME

4 answers

sRNAworkbench one of the easiest tool for the analysis. Apart from that

List of tools in OMIC tools, rna-seq, miranalyzer, shortran

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written by Prasad Prasad

https://oasis.dzne.de/ is a good one!

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written by Floris Brenk Floris Brenk

Here a few options you can look into:

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written by igor igor

Another option is the SPAR small RNA-seq analysis webserver: https://www.lisanwanglab.org/SPAR.

Code: https://bitbucket.org/account/user/wanglab-upenn/projects/SPAR

Paper: https://doi.org/10.1093/nar/gky330

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written by accfree • accfree

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