how to make the difference between a specific strand and unstranded bam with visualisation
1 answer
I guess this will give you some idea what to look for, on IGV to check strand information (If you unaware of the protocol used for library preparation).
http://onetipperday.sterding.com/2012/07/how-to-tell-which-library-type-to-use.html
(Beware of the users comment from this blog - consider this too)
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