CDS extraction from mRNA sequences
I have got 2 fasta files, One contains mRNA sequences and other contain amino acid sequences . I want to extract CDS from of the given genes. I have generated GFF file also but not able to extract CDS from there too.Please suggest !!
Thank you
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chandrakant •
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Hi, I guess transdecoder can help : http://transdecoder.github.io/
please check this out:
https://groups.google.com/forum/#!searchin/trinityrnaseq-users/CDS/trinityrnaseq-users/6cHqmFs0VCg/4kZoBRzyAQAJ