SNP flanking sequence from vcf and reference.fa for non-model organism

I want to extract 500bp upstream and downstream region for SNP in VCF using fasta file, followed by ATGC content of flanking sequence.

snp

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written 10.1 years ago by tiwari.tanushree •

pull out flanking sequences of snp

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written 10.1 years ago by GenoMax

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