mirna search in case of unavailability of EST sequence
I have performed deep sequencing for miRNA search. how can I identify miRNAs whose EST is not available
next-gen
• 1,474 views
•
link
updated
by
GenoMax
•
written
by
preeti.sh3787 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Detect precursor but not mature miRNA in small RNA-seq data?
written by Rey •Hi all, I am trying to identify known miRNAs. First, I used only mature miRNAs to align with my sRNA-seq data using bowtie. One miRNA …
-
Best tools for miRNA target prediction
written by simone.castellana •Hi, I have sequencing data for microRNA on common bean (*Phaseoulus vulgaris*), all stored in fastq format. I have used sRNAtoolbox to identify the miRNAs; …
-
How to depict Circos plot for miRNA and their targets?
written by itsanju87 •Can anyone suggest how can we plot miRNA and its targets using "circos plot" Reference "An approach to identify the novel miRNA encoded from H. …
-
Senior Research Fellow
written by preeti.sh3787 •Can anyone tell me if I have to match my miRNAs for protein-protein interactions, which free software can I use and how?
-
miRNA-Target coexpression and network
written by PrasadHello, i have miRNA data for 4 samples (plant whose genome is not available) and have corresponding predicted targets. I have the following queries. 1. …
-
Identify miRNA from deep RNA sequencing
written by hanaI have deep RNA sequences of human one cell line (100bp,paired-end). I used the reference annotation from Gencode (version 22) for transcript assembly of my …
-
Could anyone please help me in identifying novel miRNAs from plant species without a reference geno…
written by anjalinair20 •I am working on MicroRNA seq data analysis. I have completed the preprocessing steps and a blastn search was performed against plant mature MicroRNAs from …
-
Plant miRNA prediction
written by swati25887 •Hi everyone I am doing a next gen sequencing project to identify miRNA in brassica. I made the small RNA libraries and sent them for …
-
miRNA identification- animals
written by Nandhini devi •Hi !! plz anyone can tell me the procedure for miRNA identification in animals using EST.. I did blastn and blastx search to select the …
-
Mirna From Pdb
written by grosy •<p>Hi all,</p> <p>I was trying to look at miRNA crystals structures present in PDB. But whenever i try to search miRNA structures there is always …
miRDeep2
How To Find Mirnas In Deep Sequencing Data When Genomic Sequence Unavailable
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0066857