I need to do metabolite set enrichment analyses/pathway analyses using the observed list of metabolites and their levels. The metabolites were observed from Mycobacterium tuberculosis (M.tb) strain. I want to do the above analyses using the complete metabolite list/set of M.tb as background. Can anyone please suggest as where can I find the list and how to download. highly appreciate the help.
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written
by
ganjirax •
1 answer
I assume by levels you mean concentrations? Have you looked at MBRole or MetaboAnalyst? You could input your metabolite names/identifiers (theres a conversion tool on MBRole for this too) into MBRole with the relevant organism selected and get your pathway enrichment.
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