At figure for an enrichment analysis
Hi,
I'm doing an enrichment analysis of metabolites which their concentration affects a certain clinical outcome - determined by an PLS regression analysis. I then do an enrichment analysis on these metabolites for their metabolic pathway. So the results are for each pathway, the number of metabolites in it and the corresponding p-value and q-value. What's a good way to visualize these enrichments? Preferably using R's ggplot2.
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http://www.nature.com/ncomms/2015/150724/ncomms8743/extref/ncomms8743-s1.pdf
Look at Supplementary Figure 4 (pheatmap combined barplot)
OR
http://genescf.kandurilab.org/ftp/GeneSCF-Documentation_v1.1.pdf
Page 12 (ggplot2 bubble plot)
I hope this helps.
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