At figure for an enrichment analysis

Question

[rubic]

Hi,

I'm doing an enrichment analysis of metabolites which their concentration affects a certain clinical outcome - determined by an PLS regression analysis. I then do an enrichment analysis on these metabolites for their metabolic pathway. So the results are for each pathway, the number of metabolites in it and the corresponding p-value and q-value. What's a good way to visualize these enrichments? Preferably using R's ggplot2.

Answer 1

[EagleEye]

http://www.nature.com/ncomms/2015/150724/ncomms8743/extref/ncomms8743-s1.pdf

Look at Supplementary Figure 4 (pheatmap combined barplot)

OR

http://genescf.kandurilab.org/ftp/GeneSCF-Documentation_v1.1.pdf

Page 12 (ggplot2 bubble plot)

I hope this helps.