Are there any software for the alignment-free bacterial whole genome sequence similarity search and comparison?
Are there any working software (s) for the alignment-free bacterial whole genome sequence similarity search and comparison? Thx.
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kloetzl
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hrenchert747 •
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hrenchert747 •
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If all you want is a tree via evolutionary distances, there are plenty of tools available:
- andi (shameless self-plug ☺)
- spaced words
- mash
- co-phylog
- kr, alfred, missmax, aff, csc, skrakov-phy, …
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