Are there any software for the alignment-free bacterial whole genome sequence similarity search and comparison?
Are there any working software (s) for the alignment-free bacterial whole genome sequence similarity search and comparison? Thx.
• 1,922 views
•
link
updated
by
kloetzl
•
written
by
hrenchert747 •
•
written
by
hrenchert747 •
1 answer
If all you want is a tree via evolutionary distances, there are plenty of tools available:
- andi (shameless self-plug ☺)
- spaced words
- mash
- co-phylog
- kr, alfred, missmax, aff, csc, skrakov-phy, …
Log in to answer this question.
More posts like this
-
Gene prediction methods
written by Pratheep •
-
What software is designed to do human identity analysis applying CODIS and other panels of forensic…
written by mathisdead •
-
Modern software for whole genome alignment visualization
written by predeus
-
comparing protein sequences to identify conserved regions
written by ppawar •
-
Bacterial genome comparison
written by dewalasahabram •
-
Tools for identifying transposons on the genome of P. aeruginosa
written by hgu0618 •
-
Is there any good GWAS software for the whole bacterial genomes?
written by hrenchert747 •
-
What to choose for the custom WGS bacterial data processing pipeline: KNIME or Galaxy or smth else?
written by hrenchert747 •
-
is there any software designed for the VCF file similarity search?
written by hrenchert747 •
-
What open source short read aligner is the best for the WGS bacterial alignment as a backend of web…
written by hrenchert747 •
