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Bacterial genome comparison

Hello, Everybody!! I am working on bacterial genomics. I want to do genome comparison between bacterial strain in order to find similarity and dissimilarity between them for which i will do multiple genome alignments, phylogenetic studies , genome visualizations, SNP analysis. So, can anybody tell me well known bioinformatics tools which help me to fulfill my job.

genome
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updated by GenoMax GenoMax • written by dewalasahabram • dewalasahabram

I have used MAUVE for creating a genome alignment of some bacterial genomes. The alignment has been completed and I have got a image showing LCB's. But I want to export the orthologs which are detected in these genomes. I am trying to export this file with the help of 'Export orthologs' command from the Tools menu. It is creating a output file, but file created by it is empty (0kb). Can you help me with this, if I am going wrong somewhere?

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written by glady glady

Hello dewalasahabram!

Please don't post the same question multiple times (even if a few weeks apart). You received several suggestions for the last post which you do not appear to have followed-up on.

MAUVE - genome alignment

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

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written by GenoMax GenoMax

1 answer

Mauve is a popular choice.

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written by GenoMax GenoMax

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