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Run old tRNAscanSE output on tDRmapper

Hi erverybody,

I am trying to get tDRmapper running on an tRNAscanSE output version 1.3.1 https://github.com/sararselitsky/tDRmapper Unfortunately the script provided only takes input from gtRNAdb which is the output of tRNAscanSE 2.0 The source code of 2.0 is not public yet.

Here is the link of the script that takes the output of 2.0 and makes a multifasta of mature tRNAs: Perl skript

Unfortunately I am not a coder. Can someone help me to change the script to process the old tRNAscanSE output?

rna-seq rna-seq sequence alignment
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written by weissert • weissert

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