calculating frequency of snps
Is there any Tool that can be used to calculate frequency (MAF) by using rs ids of snps?
• 3,062 views
•
link
written
by
12021560-040
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Polygenetic risk score construction in UKBB
written by Shawnae Wang •
-
Calculate the allele frequency of specific sub-population using VEP
written by Abdul Rafay Khan
-
How to calculate Mutation Frequency for each Gene using TCGA SNV data?
written by mausamkumravat •
-
tools to calculate Exac population specific frequency
written by jan
-
Annotation of synonymous SNPs
written by 12021560-040
-
Obtaining Vcf from Snp list
written by 12021560-040
-
Frequency Threshold for WAnnovar
written by 12021560-040
-
Plot minor allele frequency distribution in R?
written by dam4l
-
Risk allele frequency via 1000 genome browser
written by 12021560-040
-
Risk allele frequency via 1000 genome browser
written by 12021560-040
MAF in your cohort (VCF)? Otherwise, you can use EXAC database or dbSNPs.
Can you provide with me guideline that how can I use dbSNPs or EXAC Database?
Yes, I recommend trying Variant Effect Predictor because you can get frequency broken out by subpopulation. Link is here:
http://useast.ensembl.org/Tools/VEP
Can submit one or a list of rsids.