Frequency Threshold for WAnnovar
I have annotated the vcf files of snps through WAnnovar. But I am confused that what could me minor allele frequency (MAF) or Risk allele frequency threshold that I can apply to sort out my results. For example If I want to sort out snps associated with Type 2 Diabetes in Asian population than what could be my frequency threshold that shows that the snps I have taken are associated with Disease.
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