Ideograms in GenomeGraphs for GRCh38
I am trying to use the GenomeGraphs package in R to generate Ideogram plots and pair them with some other data tracks.
ideogram <- makeIdeogram(chromosome = 19)
I was wondering if there is a way you can specify the reference used (GRCh38 in my case), or even find out what reference is being used by default?
Thank you Fouad
• 2,309 views
•
link
written
by
fouad.yousif •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How to Specify Power Parameter for Adjacency in modulePreservation() (WGCNA)
written by Berkan •
-
How do I generate a Manhattan plot like this?
written by mert •
-
Generating a novel sequence that does not align with a given genome (Scrabled LNA probe generation)
written by gkunz •
-
Can I use pplacer with a tree constructed in Fasttree?
written by pramirez •
-
Correlation between three platforms
written by tdfyoder •
-
Change ploidy level of SNP genotypes vcf in r
written by irieljoerin •
-
unplaced, unlocalized, ... scaffolds from hg19 to GRCh38
written by tabone.olivier •
-
Fst from 012 genotype matrix
written by Jautis
-
NimbleGen MicroArray Analysis via ArrayExpress Data base
written by morovatunc
-
Which Tool Is Used To Plot The Ideogram Shown Here?
written by Sandeep
