Hello everyone I am trying do molecular docking almost more than a thousand proteins with a ligand but if I am using autodock vina I …

I am getting this error while using the Grid option in autodock 4. kindly help me how do I solve this error? I have tried …

I tried a docking procedure in Autodock. I followed the normal procedure that is undertaken in any docking. It included removal of water molecules and …

I am trying to model a protein of length 438aa. It has ~88% identity and ~80% query coverage with existing PDB structures. I had initially …

Hi, AutoDock tools users I have used both AutoDock vina and AutoDock tools on Ubuntu 14.04 and OSX (10.9). Because the use of them is …

Is it wise to use fungal protein as template to model bacterial protein? I am using Phyre2 and Swiss Model?

It's necessary to minimize energy for protein before docking (docking with autodock vina), and what to use for this, what software to use, I download …

<p>Hi. I have modeled one protein composed of peptide stretches from different proteins. I have used <em>ab initio</em> modeling to generate my model using phyre2 …

I have some protein-ligand complexed that I have been docking with some other software and just want to use Autodock to evaluate those complexes. So, …

<p>For my school project I need to find if curcumin has binding sites in P01106 (UniProt ID). My steps were 1)build a model 2)find ligand …