Hi Biostar community,
I am interested to know if there is a tool or software which can take mgrast pathway output and provide list of altered pathways between the groups. and provide nice visualization with good resolution.
Thanks!
1 answer
See these sites:
ftp://ftp.metagenomics.anl.gov/data/manual/mg-rast-manual.pdf
it's a paper from 2011, but it is highly cited:
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3044276/
This paper is from 2012 and also highly cited.
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0038183
It's very recent and has nice visualization:
http://www.bioconductor.org/packages/release/bioc/vignettes/mmnet/inst/doc/mmnet.pdf
There is ngs-tools discussion as well:
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