CNV detection analysis using R or Matlab
I am trying to do a CNV detection analysis. I have 3 BAM files from the whole exome, and I know that in one of them there is an amplification in the chromosome 2. I wolud like to know whis is the best method for the analysis. I am able to work with R and MatLab. Thanks!
1 answer
Use the off-target data to do copy number analysis, for example with CopyWriteR. Alo see this post: Revolution (?) in CNA detection using exome/targeted sequencing
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