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Detect CNVs in single sample using cn.MOPS

Hi all,

Using cn.MOPS for CNV detection and it requires optimally 6 samples (6 BAM files) to effectively run the analysis. I am generating CNV plots for each chromosome but I believe it outlines the CNVs for all samples.

What I want is generate plots for CNVs detected in any one sample i.e. generate CNV plots for every chromosome for any sample. How can that be done?

Thanks in advance.

cn.mops cnv
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updated by colindaven colindaven • written by win win

There are many other CNV tools that can fetch you graphs on the basis of chromosome, gene and individual sample. some are as follows: ControlFREEC ONCOCNV Cnvkit

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written by mittu1602 mittu1602

1 answer

Why not use "related" public data from the same species using the NCBI SRA / EBI ENA (to get fastq).

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written by colindaven colindaven

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