Best method for identification of Transcription Factor Binding Sites at genome level?

Can anyone please suggest a good tool or pipeline for indication of Transcription Factor Binding Sites (such as E-box and D-box) at genome level of zebrafish?

next-gen genome

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updated 10.2 years ago by Jean-Karim Heriche

• written 10.2 years ago by xiaofeng.dong12 •

1 answer

The Bioconductor workflow generegulation demonstrates how to find putative binding sites for known TFs in a genome. There's also the match program of BioBase.

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written 10.2 years ago by Jean-Karim Heriche

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