Question: microRNA visulaization data track
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Is there a separate browser for microRNAs visualization? It is small RNA-seq data

ADD COMMENTlink 3.7 years ago rob.costa1234 • 160 • updated 3.7 years ago natasha.sernova ♦ 3.5k
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The miRNAs come from the genome and can be aligned to the genome, so I am not sure a separate browser is necessary.

ADD COMMENTlink 3.7 years ago igor 7.7k
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Map you small RNA-seq data, get BAM files, convert BAM to bigWig and visualize on UCSC genome browser.

ADD COMMENTlink 3.7 years ago Chirag Nepal ♦ 2.2k
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I have tried to visualize .tdf from bam as such in IGV/ UCSC browser but differences in two samples are hard to see nicely, even though there are significant differences in two samples. I am not getting the same quality visualization as I see with regular Chipseq/ RNAseq. The reason may be of there small size

ADD REPLYlink 3.7 years ago
rob.costa1234
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