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microRNA visulaization data track
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4.7 years ago
rob.costa1234 • 160
@rob.costa12347551

Is there a separate browser for microRNAs visualization? It is small RNA-seq data

microRNA track • 708 views
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4.7 years ago
igor 7.7k
@igor18998

The miRNAs come from the genome and can be aligned to the genome, so I am not sure a separate browser is necessary.

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4.7 years ago
Chirag Nepal ♦ 2.2k
@Chirag Nepal3208

Map you small RNA-seq data, get BAM files, convert BAM to bigWig and visualize on UCSC genome browser.

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I have tried to visualize .tdf from bam as such in IGV/ UCSC browser but differences in two samples are hard to see nicely, even though there are significant differences in two samples. I am not getting the same quality visualization as I see with regular Chipseq/ RNAseq. The reason may be of there small size

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